Twilight Princess

[DarkFlood2]

However, did Ganon ever manipulate anyone to resurrect him? As far as we know he didn't. Thus, one could say that he is a final boss, but not a final villain.

As I said before, I'm not questioning his bossness, I'm questioning whether or not he was the antagonist in the story for that game. All of the evidence points to someone else, not Ganon.

@Drace: No, FFX doesn't count because Yu-Yevon was controlling Sin.